Noé Cochetel

The paper identifies a major locus for boron exclusion in wild Vitis species through genetic mapping and phenotyping, supporting its use in breeding boron-tolerant rootstocks.

This study identifies haplotype-specific expression of a terpene synthase gene as the source of linalool variation in Riesling grapevines, showing regulatory variation within terpene synthase clusters drives monoterpene diversity.

This study evaluates Vitis germplasm diversity to predict adventitious rooting traits, identifying genetic loci and developing genomic prediction models for improved grapevine rootstock breeding.

The paper characterizes genome organization and sex-biased gene expression in the vine mealybug, revealing female-skewed, spatially clustered expression patterns and lineage-specific secreted proteins.

This study analyzes introgression and adaptive repeatability across 48 Vitis species using whole-genome data, finding widespread introgression and shared genetic variation.

The paper shows that TPS gene expression, not copy number, explains aroma diversity in grapevine cultivars by analyzing haplotype-resolved genomes and validating enzyme activity through functional assays.

The paper analyzes haplotype diversity at the PdR1 locus in Vitis species to identify resistance mechanisms against Pierce's Disease.

The paper constructs a multi-organ single-nucleus transcriptomic atlas of grapevine, revealing organ-independent regulatory programs in companion cells.

The paper characterizes clonal genomic diversity in Chilean Carmenere grapevines using genome sequencing, identifying thousands of private SNVs and indels per clone.

The paper quantifies methylation inheritance in clonally propagated grapevines using phased genomes and multi-omics data, showing remarkable stability of epigenetic marks despite clonal variability.

The paper identifies NLR genes associated with powdery mildew resistance loci Ren6 and Ren7 in Vitis piasezkii by analyzing phased genomes and structural variation across multiple accessions.

This study identifies genetic loci in grapevine that influence berry-associated microbial communities, including pathogenic fungi and fermentative yeasts, revealing broad genetic control over microbiome assembly.

The paper investigates smoke-induced transcriptional changes in grapevines, identifying glycosyltransferases linked to smoke taint formation and proposing targets for breeding interventions.

This study traces the evolutionary history of the grape sex-determining region across angiosperms, finding it conserved in flowering plants but not in non-flowering plants.

This study identifies genetic loci associated with chloride exclusion in grapevines using GWAS and QTL mapping across a diverse germplasm collection.

The paper assembles and annotates the genomes of two teinturier grapevine varieties, Dakapo and Rubired, providing genetic resources for studying pigmentation and other traits.

This study uses dual-organism single-nucleus transcriptomics to analyze grapevine and Erysiphe necator gene expression during early powdery mildew infection, identifying cell type markers and immune response patterns.

This study constructs a super-pangenome of North American wild grape species to capture genetic diversity and identify loci associated with adaptive traits like salt tolerance.

The paper analyzes pangenomes of grapevine trunk pathogens to compare the evolution of virulence factors across species.

The paper reports chromosome-scale diploid assemblies of three grape rootstocks using PacBio HiFi sequences and HaploSync, providing resources for studying stress adaptation and marker development.

This study identifies multigenic resistance to Xylella fastidiosa in wild grapes and shows climate dependence of resistance traits.

The paper identifies and characterizes haplotype-resolved resistance loci in Muscadinia rotundifolia, revealing structural variations affecting NLR genes involved in powdery mildew resistance.

HaploSync improves diploid genome assemblies by phasing, correcting scaffolding errors, and filling gaps in multiple species.

The paper assembles the diploid genome of Muscadinia rotundifolia, identifies chromosome fusions, and detects expanded disease resistance genes in comparison to Vitis species.