Tim Dunn

This paper introduces a universal bacterial identification system using ITS-targeting primers that outperforms existing methods in speed, cost, and taxonomic breadth.

This work extends vcfdist to jointly benchmark SNPs, INDELs, and SVs, showing error reductions and improved accuracy over previous methods.

The paper introduces vcfdist, a tool that improves the accuracy of benchmarking phased small variant calls in human genomes by addressing biases in variant representation and evaluation methods.

nPoRe improves INDEL recall in nanopore sequencing by extending gap penalties in alignment, achieving 73.04% recall with no loss of precision.