Author

Sami K. Kilpinen

University of HelsinkiORCID 0000-0003-3444-2539Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Organism:mouse· 3 Approach:statistical model· 3 Research Focus:cell type annotation· 2 Research Focus:gene regulatory network inference· 2 Assay:bulk RNA-seq· 1 Assay:ChIP-seq· 1 Research Focus:differential expression· 1 Approach:experimental assay· 1

Frequent Co-Authors

Kaia AchimiD· 3 shared Heidi Heliölä· 2 shared Juha M. PartaneniD· 2 shared Aki Makkonen· 1 shared Amos Bonsdorff· 1 shared Anna KirjavaineniD· 1 shared Dag StenbergiD· 1 shared Lassi Virtanen· 1 shared

Activity by Year

2022-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 30 mutual co-author links

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3 shared papersDevelopmental Biology

Kaia AchimORCID

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3 papers

Recent·Most cited

Developmental BiologybioRxivJan 26, 2025

Gene regulatory mechanisms guiding bifurcation of inhibitory and excitatory neuron lineages in the anterior brainstem

Sami K. Kilpinen, Lassi Virtanen, Silvana Bodington-Celma…·Juha M. Partanen

The paper investigates gene regulatory mechanisms controlling the differentiation of inhibitory GABAergic and excitatory glutamatergic neurons in the anterior brainstem using chromatin accessibility and transcription factor analysis.

2 citations

mouseChIP-seq

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GenomicsBMC GenomicsPeer-reviewedNov 30, 2023

Neuron types in the developing mouse CNS can be divided into several epigenomic and transcriptomic classes

Sami K. Kilpinen, Heidi Heliölä, Kaia Achim

The paper maps chromatin accessibility and gene expression in developing mouse CNS neurons to define epigenomic and transcriptomic cell types.

5 citations

mousescATAC-seq

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Developmental BiologyDevelopmentPeer-reviewedJul 11, 2022

Gata2, Nkx2-2 and Skor2 form a transcription factor network regulating development of amidbrain GABAergic neuron subtype with characteristics of REM sleep regulatory neurons

Anna Kirjavainen, Parul Singh, Laura Lahti…·Juha M. Partanen

The paper identifies a transcription factor network involving Gata2, Nkx2-2, and Skor2 that regulates the development of midbrain GABAergic neurons associated with REM sleep regulation.

13 citations

mouserat

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