Author

Méabh MacMahon

LifeArcORCID 0000-0003-3477-2941Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Approach:machine learning (classical)· 2 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Research Focus:database / resource· 1 Research Focus:differential expression· 1 Research Focus:drug response / drug discovery· 1 Approach:experimental assay· 1

Frequent Co-Authors

Namshik HaniD· 3 shared Anika LiuiD· 2 shared Gehad YoussefiD· 2 shared Lilly Wollman· 2 shared Nicholas M. KatritsisiD· 2 shared Sanjay RatheeiD· 2 shared Woochang HwangiD· 2 shared Daniel KottmanniD· 1 shared

Activity by Year

2022-2025 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 27 mutual co-author links

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3 shared papersBioinformatics

Namshik HanORCID

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3 papers

Recent·Most cited

BioinformaticsCommunications ChemistryPeer-reviewedDec 12, 2025

Utilising multi-modal data-driven network analysis to identify monotherapy and combinational therapy targets in SOX2-dependent squamous cell lung cancer

Woochang Hwang, Daniel Kottmann, Wenrui Guo…·Namshik Han

The paper develops a computational pipeline to identify drug targets for SOX2-dependent lung cancer using multi-modal data and validates them in vitro.

2 citations

humanbulk RNA-seq

𝕏 PostBluesky

BioinformaticsFrontiers in GeneticsPeer-reviewedAug 9, 2022

dialogi: Utilising NLP with chemical and disease similarities to drive the identification of Drug-Induced Liver Injury literature

Nicholas M. Katritsis, Anika Liu, Gehad Youssef…·Namshik Han

The paper presents an automated pipeline using NLP and chemical/disease embeddings to classify DILI-related literature, achieving high F1-scores in distinguishing DILI-positive from negative papers.

2 citations

machine learning (classical)benchmarking

𝕏 PostBluesky

BioinformaticsFrontiers in GeneticsPeer-reviewedJun 29, 2022

DILIc: An AI-based classifier to search for Drug-Induced Liver Injury literature

Sanjay Rathee, Méabh MacMahon, Anika Liu…·Namshik Han

This paper introduces DILIc, an AI classifier that identifies Drug-Induced Liver Injury literature using NLP and ML, achieving high accuracy in cross-validation and external validation.

11 citations

machine learning (classical)database / resource

𝕏 PostBluesky