Clare M. Robinson

This paper introduces minimod, a tool for analyzing base modifications in long-read sequencing data, showing significant speed improvements over existing tools.

The paper uses engineered bacterial biosensors to measure sialic acid availability in the inflamed mouse gut, revealing spatial and temporal variations linked to inflammation.

The paper develops a platform to identify inducible biosensors from microbial sources, demonstrating its ability to find novel sensors responsive to inflammatory conditions in the gut.

FlopR calibrates and normalizes flow cytometry and plate reader data using a unified R package, validated on E. coli GFP expression data to identify subpopulations from bulk measurements.