Author

Alexey Koshkin

Columbia University Irving Medical CenterORCID 0000-0003-3583-3136Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Bioinformatics· 1 Immunology· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Organism:human· 2 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Research Focus:cell-cell communication· 1 Research Focus:differential expression· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1 Assay:scRNA-seq· 1

Frequent Co-Authors

Anna EichingeriD· 1 shared Aoife Young· 1 shared Boris ReizisiD· 1 shared Donna L. FärberiD· 1 shared Fabien Crauste AiD· 1 shared Junichi YoshikawaiD· 1 shared Kranthi Kiran Kishore TanagalaiD· 1 shared Ladan Fazlollahi· 1 shared

Activity by Year

2024-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 29 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

1 shared paperImmunology

Anna EichingerORCID

Mutual co-authors in cluster

Author profile →

2 papers

Recent·Most cited

Dynamic remodeling of the pancreas immune landscape in obesity.

Alexey Koshkin, Kranthi Kiran Kishore Tanagala, Anna Eichinger, Michael Chait, Aoife Young, Shanila Shakil, Junichi Yoshikawa, Yosuke Sakamoto, Steven B. Wells, Ladan Fazlollahi, Xiaojuan Chen, Boris Reizis, Donna L. Färber, Stuart Phillip Weisberg

This study identifies how obesity alters the pancreatic immune landscape by shifting macrophage subsets and enhancing T-cell interactions, contributing to chronic inflammation.

Nature Communications · Jul 28, 2026Peer-reviewedImmunology

Stochastic modeling of a gene regulatory network driving B cell development in germinal centers

Alexey Koshkin, Ulysse Herbach, María Rodríguez Martínez, Olivier Gandrillon, Fabien Crauste A

The paper uses a stochastic model to fit single-cell transcriptomic data and shows it can recapitulate mRNA distributions during B cell differentiation in germinal centers.

PLoS ONE · Mar 28, 2024Peer-reviewedBioinformatics