Author

Nicole E. Avalon

Scripps Institution of OceanographyORCID 0000-0003-3588-892XUnclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 3 Microbiology· 1

Signature Assays, Organisms & Methods

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Assay:metabolomics· 3 Approach:statistical model· 3 Research Focus:database / resource· 2 Research Focus:drug response / drug discovery· 2 Assay:metagenomics· 2 Approach:deep learning· 1 Approach:experimental assay· 1 Organism:human· 1

Frequent Co-Authors

Alan K. JarmuschiD· 3 shared Andrés Mauricio Caraballo‐RodrígueziD· 3 shared Helena Mannochio-RussoiD· 3 shared Mingxun WangiD· 3 shared Paulo Wender Portal GomesiD· 3 shared Pieter C. DorresteiniD· 3 shared Shipei XingiD· 3 shared Sydney P. ThomasiD· 3 shared

Activity by Year

2023-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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3 shared papersBioinformatics

Alan K. JarmuschORCID

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4 papers

Recent·Most cited

MicrobiologyJournal of Natural ProductsPeer-reviewedJun 25, 2026

AI-Accelerated Structure Elucidation of Boavistamides A-C, Cyclic Depsipeptides from a Marine Filamentous Cyanobacterium Collected in Cabo Verde

Marine Cuau, Nicole E. Avalon, Byeol Ryu…·William H. Gerwick

The paper identifies three new cyclic depsipeptides from a marine cyanobacterium using AI tools and metabolomics, showing their antiplasmodial activity and structural diversity.

DOI 10.1021/acs.jnatprod.6c00391

metabolomicsdeep learning

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BioinformaticsbioRxivPreprintJan 29, 2026

Community Curation of Microbial Metabolites Enables Biological Insights of Metabolomics Data

Helena Mannochio-Russo, Wilhan Donizete Gonçalves Nunes, Shipei Xing…·Pieter C. Dorrestein

The paper introduces a collaborative platform for curating microbial metabolite knowledge to enhance metabolomics data interpretation.

3 citations

metagenomicsexperimental assay

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BioinformaticsbioRxivPreprintOct 7, 2024

Empirically establishing drug exposure records directly from untargeted metabolomics data

Haoqi Nina Zhao, Kine Eide Kvitne, Corinna Brungs…·Pieter C. Dorrestein

The paper develops a drug exposure resource from untargeted metabolomics data to identify medications without clinical records.

3 citations

humanmetabolomics

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BioinformaticsNature CommunicationsPeer-reviewedDec 20, 2023

Open Access Repository-Scale Propagated Nearest Neighbor Suspect Spectral Library for Untargeted Metabolomics

Wout Bittremieux, Nicole E. Avalon, Sydney P. Thomas…·Pieter C. Dorrestein

The paper creates a suspect spectral library for untargeted metabolomics by propagating annotations from public MS/MS spectra to improve interpretation of unannotated spectra.

98 citationstop 1%

metagenomicsmetabolomics

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