Author

Emma K. Haley

Boston Children's HospitalORCID 0000-0003-3610-7873Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Genetics· 2 Genetic & Genomic Medicine· 1

Signature Assays, Organisms & Methods

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Research Focus:differential expression· 3 Research Focus:gene regulatory network inference· 3 Organism:human· 3 Approach:statistical model· 3 Assay:ChIP-seq· 2 Approach:experimental assay· 2 Assay:GWAS summary statistics· 2 Assay:bulk RNA-seq· 1

Frequent Co-Authors

James N. JarvisiD· 3 shared Kaiyu JiangiD· 3 shared Adam Youlin HeiD· 2 shared Charles G. DankoiD· 2 shared Elizabeth A. Crinzi· 2 shared Gilad BarshadiD· 2 shared Marc SudmaniD· 2 shared Susan D. ThompsoniD· 2 shared

Activity by Year

2022-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 43 mutual co-author links

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3 shared papersGenetics

James N. JarvisORCID

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3 papers

Recent·Most cited

Genetic & Genomic MedicinemedRxivPreprintDec 16, 2025

Functional and Computational Interrogation of the Juvenile Idiopathic Arthritis Risk Loci Identifies Candidate Causal SNPs and Target Genes in CD4+ T cells

Kaiyu Jiang, Emma K. Haley, Gilad Barshad…·James N. Jarvis

The paper identifies candidate causal SNPs and target genes in CD4+ T cells for juvenile idiopathic arthritis using GWAS data, chromatin accessibility, and functional assays.

DOI 10.64898/2025.12.15.25342296

humanGWAS summary statistics

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GeneticsbioRxivPreprintAug 19, 2024

Using Functional Genomic Data in Monocytes/Macrophages and Genotyping to Nominate Disease-Driving Single Nucleotide Polymorphisms and Target Genes in Juvenile Idiopathic Arthritis

Emma K. Haley, Gilad Barshad, Adam Youlin He…·James N. Jarvis

The paper identifies disease-driving SNPs in JIA risk haplotypes using functional genomic data and genotyping, and links them to target genes through chromatin interactions.

1 citation

humanbulk RNA-seq

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GeneticsFrontiers in ImmunologyPeer-reviewedSep 29, 2022

Analysis of Chromatin Data Supports a Role For CD14+ Monocytes/Macrophages in Mediating Genetic Risk for Juvenile Idiopathic Arthritis

Elizabeth A. Crinzi, Emma K. Haley, Kerry E. Poppenberg…·James N. Jarvis

The paper uses chromatin data to show JIA risk variants affect innate immunity through enrichment of epigenetic marks in monocytes and macrophages.

9 citations

humanChIP-seq

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