Pavla Navrátilová

The paper links structural variation to regulatory genome function in barley by analyzing epigenomic data across multiple genotypes and developmental contexts.

The paper annotates CREs in the barley genome using epigenetic profiling and HiChIP, identifying 77,000 CRE candidates and revealing promoter-promoter interactions.

The paper identifies centromeric repeat diversity in hop that contributes to non-Mendelian segregation patterns and genome instability during meiosis.

The paper shows extreme genome scrambling in cryptic Oikopleura dioica species, revealing high rates of gene order rearrangements and insights into synteny conservation mechanisms.

The paper analyzes sequence gaps in the barley MorexV3 reference genome, identifying centromeric and repeat regions as major contributors to fragmentation and discussing strategies for gap closure.

The paper uses a multi-omics approach to analyze the structure, expression, and methylation of rRNA loci in wheat, revealing tissue-specific expression patterns and silencing mechanisms.

The paper shows that trans-splicing of mRNAs links gene transcription to translational control regulated by mTOR in Oikopleura dioica.

The paper identifies core promoter elements driving transcription initiation during developmental transitions in the marine chordate Oikopleura dioica, revealing both conserved and novel features compared to vertebrates.