Zuzana Tulpová

A chromosome-scale genome assembly of Hordeumerectifolium: genomic, transcriptomic and anatomicaladaptations to drought in a wild barley relative

This study presents a chromosome-scale genome of H. erectifolium, a drought-tolerant wild barley relative, and identifies genomic and transcriptomic adaptations to drought compared to cultivated barley.

Epigenome and interactome profiling uncovers principles of distal regulation in the barley genome

The paper annotates CREs in the barley genome using epigenetic profiling and HiChIP, identifying 77,000 CRE candidates and revealing promoter-promoter interactions.

The Silene latifolia genome and its giant Y chromosome

This study sequences the giant Y chromosome of Silene latifolia and reveals its structure, function, and evolutionary history.

Optical Genome and Epigenome Mapping of Clear Cell Renal Cell Carcinoma

The paper uses optical genome and epigenome mapping to identify somatic alterations in early-stage clear cell renal cell carcinoma, revealing both known and novel genomic and epigenomic changes.

Long-Read Structural and Epigenetic Profiling of a Kidney Tumor-Matched Sample with Nanopore Sequencing and Optical Genome Mapping

The paper compares optical genome mapping and nanopore sequencing for structural and epigenetic analysis of a kidney tumor, highlighting their strengths in variant detection and epigenetic profiling.

Prospects of telomere-to-telomere assembly in barley: analysis of sequence gaps in the MorexV3 reference genome

The paper analyzes sequence gaps in the barley MorexV3 reference genome, identifying centromeric and repeat regions as major contributors to fragmentation and discussing strategies for gap closure.

Anatomy, transcription dynamics and evolution of wheat ribosomal RNA loci deciphered by a multi-omics approach

The paper uses a multi-omics approach to analyze the structure, expression, and methylation of rRNA loci in wheat, revealing tissue-specific expression patterns and silencing mechanisms.