Author

Frank J.U.M. van der Meer

University of CalgaryORCID 0000-0003-3785-9639Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Genomics· 1 Microbiology· 1

Signature Assays, Organisms & Methods

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Organism:human· 2 Approach:statistical model· 2 Research Focus:variant calling· 2 Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1 Research Focus:cell-cell communication· 1 Assay:ChIP-seq· 1 Research Focus:differential expression· 1

Frequent Co-Authors

Guido van MarleiD· 2 shared Michael John GilliD· 2 shared A. P. Jason de KoningiD· 1 shared Alexander PlattiD· 1 shared Ambroise MarçaisiD· 1 shared Anne Van den BroekeiD· 1 shared Arsène Burny· 1 shared Carole CharlieriD· 1 shared

Activity by Year

2019-2025 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 18 mutual co-author links

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Curved chords = mutual co-authorship

2 shared papersMicrobiology

Guido van MarleORCID

Mutual co-authors in cluster

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3 papers

Recent·Most cited

MicrobiologyCommunications MedicinePeer-reviewedOct 6, 2025

Early pandemic HIV-1 integration site preferences differ across anatomical reservoirs

Hinissan P. Kohio, Hannah O. Ajoge, Emile A. Barua…·Stephen Dominic Barr

The paper analyzes HIV-1 integration site preferences in different anatomical tissues, finding distinct patterns in brain tissue with increased SINE and DHS enrichment.

1 citation

humanDNA methylation

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BioinformaticsNature CommunicationsPeer-reviewedJul 1, 2025

Apollo: A comprehensive GPU-powered within-host simulator for viral evolution and infection dynamics across population, tissue, and cell

Deshan Perera, Evan Li, Paul M. K. Gordon…·Quan Long

Apollo simulates within-host viral evolution and infection dynamics, validating limitations of transmission inference tools using HIV cohort data.

3 citations

humanwhole-genome sequencing

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GenomicsbioRxivPreprintDec 6, 2019

Pooled CRISPR Inverse PCR sequencing (PCIP-seq): simultaneous sequencing of retroviral insertion points and the integrated provirus with long reads

Maria Artesi, Vincent Hahaut, Fereshteh Ashrafi…·Keith Durkin

PCIP-seq uses long-read sequencing to simultaneously identify retroviral insertion sites and their integrated proviruses, revealing SNPs, structural variants, and viral evolution.

5 citations

long-read sequencingexperimental assay

𝕏 PostBluesky