Author

Jim Swoger

European Molecular Biology LaboratoryORCID 0000-0003-3805-0073Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Developmental Biology· 1 Molecular Biology· 1

Signature Assays, Organisms & Methods

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Organism:mouse· 2 Research Focus:spatial domain detection· 2 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:database / resource· 1 Approach:experimental assay· 1 Research Focus:software / tool· 1 Assay:spatial transcriptomics· 1

Frequent Co-Authors

Alexandre Robert‐MorenoiD· 2 shared James A. SharpeiD· 2 shared Heura Cardona-BlayaiD· 1 shared James CotterelliD· 1 shared Jaume Sastre TomasiD· 1 shared Joan T. RichtsmeieriD· 1 shared Kazuhiko KawasakiiD· 1 shared L. Russo· 1 shared

Activity by Year

2018-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 30 mutual co-author links

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2 shared papersMolecular Biology

Alexandre Robert‐MorenoORCID

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2 papers

Recent·Most cited

Molecular BiologybioRxivPreprintMar 12, 2024

Cell 3D Positioning by Optical encoding (C3PO) and its application to spatial transcriptomics

James Cotterell, Jim Swoger, Alexandre Robert‐Moreno…·James A. Sharpe

C3PO reconstructs 3D cell positions after dissociation, enabling spatial transcriptomics with 3D structure preservation.

2 citations

mousespatial transcriptomics

𝕏 PostBluesky

Developmental BiologyeLifePeer-reviewedSep 20, 2018

Quantification of gene expression patterns to reveal the origins of abnormal morphogenesis

Neus Martínez‐Abadías, Roger Mateu‐Estivill, Jaume Sastre Tomas…·James A. Sharpe

This study develops a method to trace the origins of phenotypic abnormalities by quantifying 3D gene expression patterns in developing organs, revealing subtle gene expression differences in Apert syndrome models.

24 citations

mousebulk RNA-seq

𝕏 PostBluesky