Inge Jonassen

This paper introduces a bioinformatics framework for automated cell type annotation and patient stratification using CyTOF data, showing improved sensitivity and specificity and predictive survival analysis in leukemia.

LOCATOR is a computational tool for analyzing cancer tissue microenvironments using mass cytometry imaging data, showing spatial organization links to clinical outcomes in breast cancer.

The paper identifies novel candidate genes for moulting and development in the salmon louse using gene co-expression networks and validates them via RNA interference.

The paper presents the genome of Lepeophtheirus salmonis, revealing copepod-specific features and parasitic adaptations, including gene expression shifts and loss of peroxisomes.

SeeCiTe improves CNV call quality using trio data by classifying calls and visualizing probe-level data, enhancing specificity and sensitivity in biobank-scale studies.

The paper presents a draft genome-scale metabolic model for Atlantic cod liver, demonstrating its utility in understanding metabolic responses to environmental toxicants.

This study shows that common gene expression signatures in Parkinson’s disease are driven by changes in cell composition rather than true biological changes.

RASflow provides a general RNA-Seq analysis workflow using Snakemake and Conda, supporting diverse organisms and requiring no programming skills.