Peter K. Quashie

This paper identifies two failure modes in extended reasoning models within bioinformatics tasks and introduces DTDR to improve accuracy and reduce errors.

The paper accelerates structural analysis in HADDOCK3 by reformulating RMSD and FCC clustering as GPU-based linear algebra operations, achieving significant speedups without compromising accuracy.

This study shows HIV-1 infected immune cells alter cervical cancer pathways through paracrine signals, with upregulated PI3K-AKT and interferon-stimulated genes.

The paper reprocesses SARS-CoV-2 genomic data to correct systematic errors in phylogenies using a novel assembly tool, resulting in a cleaner global tree of 4.47 million samples.

This study uses a foundation model to design and validate monoclonal antibodies targeting Plasmodium falciparum invasion complex, identifying highly effective candidates with strong binding and stability.

This study investigates the molecular epidemiology of ISKNV in Ghanaian tilapia, finding high prevalence and genotype I across Lake Volta farms.