Author

Jigyasa Arora

Innovative Genomics InstituteORCID 0000-0003-4338-2953Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Assay:CRISPR screen· 1 Approach:deep learning· 1 Organism:E. coli· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1 Research Focus:software / tool· 1

Frequent Co-Authors

Benjamin E. RubiniD· 2 shared Brady F. CressiD· 2 shared Jonathan N.V. MartinsoniD· 2 shared A. M. Wang· 1 shared Adam M. DeutschbaueriD· 1 shared Agnès Oromí-BoschiD· 1 shared Amanda T. AlkeriD· 1 shared Emily C. Pierce· 1 shared

Activity by Year

2025-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 35 mutual co-author links

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2 shared papersMicrobiology

Benjamin E. RubinORCID

Mutual co-authors in cluster

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2 papers

Recent·Most cited

MicrobiologyScience AdvancesPeer-reviewedJan 1, 2026

Identification of Proteins Influencing CRISPR-Associated Transposases for Enhanced Genome Editing

Leo Song, Amanda T. Alker, Agnès Oromí-Bosch…·Benjamin E. Rubin

This study identifies host factors that influence VchCAST activity and demonstrates that the λ-Red recombineering system significantly enhances its editing efficiency in E. coli and other bacteria.

11 citationstop 2%

E. coliCRISPR screen

𝕏 PostBluesky

Synthetic BiologyNucleic Acids ResearchPeer-reviewedOct 18, 2025

Generating functional plasmid origins with OriGen

Jamie Irvine, Jonathan N.V. Martinson, Jigyasa Arora…·Benjamin E. Rubin

OriGen generates and validates new plasmid origins of replication, demonstrating its ability to create functional sequences distinct from existing wild types.

4 citations

deep learningsoftware / tool

𝕏 PostBluesky