Alexey Danilov

This study identifies oncogenic-associated 5hmC signatures in cfDNA from cancer patients and validates their consistency with tumor-specific patterns.

PENCIL identifies phenotype-relevant cell subpopulations from single-cell data using a supervised learning framework with feature selection and trajectory prediction capabilities.

Scissor identifies cell subpopulations from single-cell data correlated with specific phenotypes using clinical information, revealing biologically relevant subpopulations in lung and melanoma cancers.