Author

Shida Shangguan

Henry M. Jackson FoundationORCID 0000-0003-4471-5318Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Immunology· 1 Systems Biology· 1

Signature Assays, Organisms & Methods

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Research Focus:differential expression· 2 Organism:human· 2 Approach:statistical model· 2 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Assay:CITE-seq· 1 Approach:deep learning· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

Aviva GeretziD· 2 shared Lauren K. YumiD· 2 shared Nelson L. MichaeliD· 2 shared Philip K. EhrenbergiD· 2 shared Rasmi ThomasiD· 2 shared Sandhya VasaniD· 2 shared Adam Tully WaickmaniD· 1 shared Aidan McGrawiD· 1 shared

Activity by Year

2021-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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2 shared papersImmunology

Aviva GeretzORCID

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2 papers

Recent·Most cited

ImmunologyNature CommunicationsPeer-reviewedMay 29, 2025

Single-cell analyses reveal that monocyte gene expression profiles influence HIV-1 reservoir size in acutely treated cohorts

Philip K. Ehrenberg, Aviva Geretz, Meta Volčič…·Rasmi Thomas

The paper uses scRNA-seq to show that monocyte IL1B expression inversely correlates with HIV-1 reservoir size in ART-treated individuals.

13 citationstop 3%

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Systems BiologyeLifePeer-reviewedSep 17, 2021

Monocyte-derived transcriptome signature indicates antibody-dependent cellular 1 phagocytosis as the primary mechanism of vaccine-induced protection against HIV-1

Shida Shangguan, Philip K. Ehrenberg, Aviva Geretz…·Rasmi Thomas

The paper identifies a monocyte-derived transcriptome signature linked to antibody-dependent cellular phagocytosis as a correlate of vaccine-induced protection against HIV-1 in clinical trials.

26 citations

humanbulk RNA-seq

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