Sumit Walia

DIPPER is a GPU-accelerated distance-based phylogenetic tool that achieves ultrafast and ultralarge phylogenetic reconstruction with improved speed, accuracy, and memory efficiency.

Panmap efficiently aligns, genotypes, and places reads on large pangenomes using phylogenetic compression, enabling rapid analysis of up to 8 million genomes.

This paper introduces PanMAN, a compressed pangenome data structure that captures evolutionary and mutational histories, achieving significant compression and enabling more efficient pangenomic analysis.