Tirthankar Mohanty

This paper designs an epitope-centric nanoparticle vaccine against Streptococcus pyogenes using structural mass spectrometry and deep learning to enhance immunogenicity.

The paper develops a proteomics strategy to infer the origin of proteins in human plasma using a proteome atlas and RNA/protein atlases, demonstrating its application in disease cohorts.

This study uses pharmacoproteomics to analyze treatment responses in a murine sepsis model, identifying distinct response patterns and drug interactions across organs and time.

This paper introduces GPS, a machine learning-based method for improving peptide and protein identification accuracy and rates in DIA proteomics by using an external dataset, and demonstrates its effectiveness in identifying biomarkers for acute kidney injury.