J. Wallis Marsh

ProFinder: Candidate constitutive promoter prediction across the bacterial tree for genetic tool development in non-model species

ProFinder predicts constitutive promoters across bacterial species to aid genetic tool development, achieving high precision and robustness across diverse genomes.

Genetic modification of Clostridium kluyveri for heterologous n-butanol and n-hexanol production

This paper develops a genetic system for Clostridium kluyveri to enable heterologous production of n-butanol and n-hexanol through modified alcohol dehydrogenases.

Chromatin accessibility dynamics of Chlamydia-infected epithelial cells

This study uses FAIRE-Seq to analyze chromatin accessibility changes in human epithelial cells infected with Chlamydia trachomatis over its developmental cycle, identifying differentially accessible regions linked to immune and metabolic responses.

Early transcriptional landscapes of Chlamydia trachomatis-infected epithelial cells at single cell resolution

The paper uses scRNA-Seq to analyze early host cell responses to Chlamydia trachomatis infection, identifying distinct transcriptional patterns and potential biomarkers.

Dual RNA sequencing (dRNA-Seq) of bacteria and their host cells

This paper introduces a method to simultaneously analyze host and bacterial transcriptomes in infected cells and provides a protocol for its implementation.