Author

Saad M. Khan

Harvard UniversityORCID 0000-0003-4686-4923Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Signature Assays, Organisms & Methods

Click to filter · or open tag

Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1 Research Focus:cell-cell communication· 1 Approach:deep learning· 1 Research Focus:differential expression· 1 Approach:graph neural network· 1 Organism:human· 1 Assay:metagenomics· 1

Frequent Co-Authors

Albert H. KimiD· 1 shared Allegra A. PettiiD· 1 shared Ananth Kesav VellimanaiD· 1 shared Anthony Z. WangiD· 1 shared Bryce L. MashimoiD· 1 shared Eric C. LeuthardtiD· 1 shared Gavin P. DunniD· 1 shared Gregory Joseph ZipfeliD· 1 shared

Activity by Year

2019-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

1 shared paperCancer Biology

Albert H. KimORCID

Mutual co-authors in cluster

Author profile →

2 papers

Recent·Most cited

Cancer BiologybioRxivPreprintMay 21, 2025

Single-Cell Analysis of Meningiomas Reveals Mutation-Associated Tumor and Immune Cell Gene Expression Programs

José Maldonado, Bryce L. Mashimo, Anthony Z. Wang…·Allegra A. Petti

This study uses single-cell and spatial transcriptomics to identify mutation-associated gene expression programs in meningiomas, linking genetic alterations to tumor and immune cell states.

DOI 10.1101/2025.05.21.655421

humanscRNA-seq

𝕏 PostBluesky

BioinformaticsbioRxivPreprintAug 16, 2019

Multiclass Disease Classification from Microbial Whole-Community Metagenomes using Graph Convolutional Neural Networks.

Saad M. Khan, Libusha Kelly

This paper develops a graph convolutional neural network for multiclass disease classification from microbial metagenomes, achieving high accuracy and AUC across 19 diseases.

5 citations

metagenomicsgraph neural network

𝕏 PostBluesky