Libusha Kelly

The paper presents the first curated genome-scale metabolic model for L. rhamnosus GG, validated using multiple approaches and provides insights into its nutrient requirements and secretions.

This study investigates the role of Klebsiella pneumoniae azoreductase in azo dye reduction, finding that its activity is lower than expected and suggesting non-enzymatic mechanisms may contribute to azo compound reduction in the gut.

This study identifies microbiome-immune-pathophysiology axes in sickle cell disease by analyzing bacterial and viral gut microbiome alterations.

This study shows how a Western-style diet alters gut microbiota and sulfur metabolism in mice, linking these changes to increased cancer risk and similar patterns in human colorectal cancer patients.

This paper introduces a topological data analysis framework to model microbiome dynamics, identifying state transitions linked to health and environmental processes.

This paper develops a graph convolutional neural network for multiclass disease classification from microbial metagenomes, achieving high accuracy and AUC across 19 diseases.