Author

Matthew D. Johnson

Woods Hole Oceanographic InstitutionORCID 0000-0003-4853-2674Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Biophysics· 1 Ecology· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 2 Research Focus:cell type annotation· 1 Research Focus:differential expression· 1 Research Focus:ecology & biodiversity· 1 Assay:electronic health records· 1 Research Focus:gene regulatory network inference· 1 Organism:human· 1 Assay:metagenomics· 1

Frequent Co-Authors

Alan KuoiD· 1 shared Anna LipzeniD· 1 shared Benjamin A. S. Van MooyiD· 1 shared Bethanie R. EdwardsiD· 1 shared Brandon Kwee Boon SeahiD· 1 shared Brittany N. SprecheriD· 1 shared Chana F. KranzleriD· 1 shared Charles F. DelwicheiD· 1 shared

Activity by Year

2025-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 24 mutual co-author links

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1 shared paperGenomics

Alan KuoORCID

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3 papers

Recent·Most cited

BiophysicsbioRxivPreprintSep 27, 2026

Whole cryo-FIB lamella acquisition at high magnification with rectangular beam montage cryo-electron tomography

Hamish G. Brown, Sepideh Valimehr, Denver P. Linklater…·Eric G. Hanssen

This paper introduces a method for high-resolution cryo-electron tomography of large biological samples using rectangular beam montage, improving dose efficiency for yeast and human neuron specimens.

DOI 10.64898/2026.09.27.753993

yeasthuman

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GenomicsbioRxivPreprintJul 13, 2026

Spliceosome loss in the red tide ciliate Mesodinium rubrum presents a symbiotic cul-de-sac

Brandon Kwee Boon Seah, Nurislam Shaikhutdinov, Wesley C. DeMontigny…·Estienne Carl Swart

The paper analyzes the nuclear genomes of Mesodinium rubrum and finds it lacks spliceosomal introns and related machinery, suggesting introns hinder endosymbiotic genomic integration.

DOI 10.64898/2026.07.09.736142

whole-genome sequencingstatistical model

𝕏 PostBluesky

EcologybioRxivPreprintMay 18, 2025

Viral infection induces oxylipin chemical signaling at the end of a summer upwelling bloom: implications for carbon cycling.

Bethanie R. Edwards, Kimberlee Thamatrakoln, Chana F. Kranzler…·Benjamin A. S. Van Mooy

This study shows viral infection of diatoms increases oxylipin production, enhancing carbon export in the ocean despite viral shunt processes.

2 citations

metagenomicsexperimental assay

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