Hechen Li

DIAVariant identifies low abundance peptide variants from DIA-MS data without relying on reference databases, improving variant discovery while maintaining specificity.

LinRace improves lineage reconstruction by integrating lineage barcodes and gene expression data, producing more accurate cell division trees and inferring ancestral cell states.

scMultiSim simulates multi-modal single-cell data by integrating cell-cell interactions and gene regulatory networks, enabling broader benchmarking of computational methods.

TedSim simulates cell division events and generates scRNA-seq and lineage barcode data to benchmark methods for cell lineage analysis.

scSVAS provides an online platform for real-time interactive visualization of single-cell copy number variation data, enabling efficient analysis and sharing of large-scale genomics results.

CNAHap phases germline variants using tumor allele-specific copy number alterations, achieving accurate haplotyping and long phasing blocks in Hepatocellular carcinoma.

LandScape provides a web-based tool for interactive visualization of genomic summary data with customizable features and export capabilities.