Author

Wenlong Jia

City University of Hong KongORCID 0000-0002-7136-9919Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Organism:human· 5 Approach:statistical model· 5 Research Focus:variant calling· 3 Assay:whole-genome sequencing· 3 Research Focus:differential expression· 2 Research Focus:gene regulatory network inference· 2 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1

Frequent Co-Authors

Shuai Cheng LiiD· 5 shared Feng YeiD· 2 shared Hechen LiiD· 2 shared Yinhu LiiD· 2 shared Yiqi JiangiD· 2 shared Yonghan YuiD· 2 shared Zhengtu LiiD· 2 shared Alnawaz RehemtullaiD· 1 shared

Activity by Year

2019-2022 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 25 mutual co-author links

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5 shared papersBioinformatics

Shuai Cheng LiORCID

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Author profile →

6 papers

Recent·Most cited

Both Simulation and Sequencing Data Reveal Multiple SARS-CoV-2 Variants Coinfection in COVID-19 Pandemic

Yinhu Li, Yiqi Jiang, Zhengtu Li, Yonghan Yu, Jiaxing Chen, Wenlong Jia, Yen Kaow Ng, Feng Ye, Shuai Cheng Li, Bairong Shen

This study uses simulation and sequencing data to show that multiple SARS-CoV-2 variants can coexist in COVID-19 patients, with an increase in the number of coinfected variants over time.

Computational and Structural Biotechnology Journal · Jan 1, 2022Peer-reviewedBioinformatics

Functional Organization of the Maternal and Paternal Human 4D Nucleome

Stephen Lindsly, Wenlong Jia, Haiming Chen, Sijia Liu, Scott Ronquist, Can Chen, Xingzhao Wen, Cooper M. Stansbury, Gabrielle A. Dotson, Charles Ryan, Alnawaz Rehemtulla, Gilbert S. Omenn, Max S. Wicha, Shuai Cheng Li, Lindsey A. Muir, Indika Rajapakse

The paper investigates allele-specific relationships between gene expression and genome structure in human cells using integrated haplotype-resolved data.

iScience · Nov 16, 2021Peer-reviewedGenomics

Resolving complex structures at oncovirus integration loci with conjugate graph

Wenlong Jia, Chang Xu, Shuai Cheng Li

This paper introduces a conjugate graph model to reconstruct local genomic maps at oncovirus integration loci, revealing five affection patterns and mechanisms of viral integration in HPV and HBV-infected cancer samples.

Briefings in Bioinformatics · Aug 13, 2021Peer-reviewedBioinformatics

CNAHap: a germline haplotyping method using tumor allele-specific copy number alteration

Bowen Tan, Lingxi Chen, Wenlong Jia, Yanfei Wang, Hechen Li, Shuai Cheng Li

CNAHap phases germline variants using tumor allele-specific copy number alterations, achieving accurate haplotyping and long phasing blocks in Hepatocellular carcinoma.

bioRxiv · Mar 27, 2021 · PreprintBioinformatics

CovProfile: profiling the viral genome and gene expressions of SARS-COV-2

Yonghan Yu, Zhengtu Li, Yinhu Li, Le Yu, Wenlong Jia, Yiqi Jiang, Feng Ye, Shuai Cheng Li

CovProfile identifies viral genomic variations and gene expressions from SARS-CoV-2 Nanopore sequences, revealing multiple strains and high expression of viral genes in patient samples.

bioRxiv · Apr 5, 2020 · PreprintBioinformatics

LandScape: a web application for interactive genomic summary visualization

Wenlong Jia, Hechen Li, Shiying Li, Shuaicheng Li

LandScape provides a web-based tool for interactive visualization of genomic summary data with customizable features and export capabilities.

bioRxiv · Dec 10, 2019 · PreprintBioinformatics