Maaike Remeijer

The paper calculates product and ATP yields for glucose fermentation by analyzing a pan-catabolic network of anaerobic digestion, revealing many novel conversions and varying ATP yields.

This paper introduces a computational framework to calculate net conversions in metabolic networks using elementary flux modes and thermodynamic parameters, with applications in microbial ecology and metabolic engineering.

The paper analyzes microbial catabolism using genome-scale stoichiometric models to show how energy and biosynthetic objectives shape metabolic pathways and precursor usage across species.

The paper investigates whether microbial cells can reduce entropy production rate by shifting to less thermodynamically driven metabolism at faster growth rates, using yeast models and experimental data.