Author

Kobe Ikegami

Virginia Commonwealth UniversityORCID 0009-0000-9159-063XUnclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Genetics· 1 Molecular Biology· 1

Signature Assays, Organisms & Methods

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Research Focus:differential expression· 3 Organism:human· 3 Approach:statistical model· 3 Assay:bulk RNA-seq· 2 Assay:long-read sequencing· 1

Frequent Co-Authors

Aileen S. JonesiD· 2 shared Amanda ButleriD· 2 shared Jeanne M. DekdebruniD· 2 shared Julia M. HartmaniD· 2 shared Kameron BatesiD· 2 shared Kiera N. BerggreniD· 2 shared Marina ProvenzanoiD· 2 shared Melissa A. HaleiD· 2 shared

Activity by Year

2024-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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2 shared papersMolecular Biology

Aileen S. JonesORCID

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Author profile →

3 papers

Recent·Most cited

Hunting for microsatellite instability in long-read data with Owl

Zev N. Kronenberg, Byunggil Yoo, Khi Pin Chua, Mark Chaisson, Lisa A. Lansdon, William J. Rowell, Guilherme De Sena Brandine, Jocelyne Bruand, Egor Dolzhenko, Kobe Ikegami, Jay Sarthy, Kie Kyon Huang, Everett T Fan, Shruti Bhise, Everett Fan, , Michael A. Eberle

Owl quantifies microsatellite instability from long-read data, identifying MSI-high genomes and motif-specific patterns in cancer samples.

PLoS Computational Biology · Sep 2, 2026Peer-reviewedBioinformatics

The Splice Index as a prognostic biomarker of strength and function in myotonic dystrophy type 1

Marina Provenzano, Kobe Ikegami, Kameron Bates, Alison Gaynor, Julia M. Hartman, Aileen S. Jones, Amanda Butler, Kiera N. Berggren, Jeanne M. Dekdebrun, Man Hung, Dana M. Lapato, Michael Kiefer, Charles A. Thornton, Nicholas Elwood Johnson, Melissa A. Hale

The paper introduces the Myotonic Dystrophy Splice Index (SI) as a biomarker that correlates with muscle strength and mobility in DM1 patients.

Journal of Clinical Investigation · Jan 7, 2025Peer-reviewedMolecular Biology

RNA mis-splicing in children with myotonic dystrophy is associated with physical function

Julia M. Hartman, Kobe Ikegami, Marina Provenzano, Kameron Bates, Amanda Butler, Aileen S. Jones, Kiera N. Berggren, Jeanne M. Dekdebrun, Marnee J. McKay, Jennifer Baldwin, Kayla Cornett, Joshua Burns, Michael Kiefer, Nicholas Elwood Johnson, Melissa A. Hale

The paper investigates the relationship between RNA mis-splicing and physical function in children with congenital myotonic dystrophy, finding significant correlations and predictive models.

bioRxiv · Jul 3, 2024 · PreprintGenetics