Author

Everett Fan

Fred Hutch Cancer Center

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

Click to filter author papers

Bioinformatics· 1 Molecular Biology· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Research Focus:differential expression· 2 Organism:human· 2 Assay:long-read sequencing· 2 Approach:experimental assay· 1 Approach:statistical model· 1 Research Focus:variant calling· 1

Frequent Co-Authors

Scott N. FurlaniD· 2 shared Ashley GrayiD· 1 shared Byunggil YooiD· 1 shared Carla A. Jaeger-RuckstuhliD· 1 shared Egor DolzhenkoiD· 1 shared Elizabeth R. LawloriD· 1 shared Emily O’Donnell· 1 shared Everett T Fan· 1 shared

Activity by Year

2025-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 27 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

2 shared papersBioinformatics

Scott N. FurlanORCID

Mutual co-authors in cluster

Author profile →

2 papers

Recent·Most cited

Hunting for microsatellite instability in long-read data with Owl

Zev N. Kronenberg, Byunggil Yoo, Khi Pin Chua, Mark Chaisson, Lisa A. Lansdon, William J. Rowell, Guilherme De Sena Brandine, Jocelyne Bruand, Egor Dolzhenko, Kobe Ikegami, Jay Sarthy, Kie Kyon Huang, Everett T Fan, Shruti Bhise, Everett Fan, , Michael A. Eberle

Owl quantifies microsatellite instability from long-read data, identifying MSI-high genomes and motif-specific patterns in cancer samples.

PLoS Computational Biology · Sep 2, 2026Peer-reviewedBioinformatics

Quantifying HLA transcripts by genotype in chimeric mixtures at single-cell resolution

Sami B. Kanaan, Jason G. Underwood, Rula Green Gladden, Everett Fan, Shruti S. Bhise, Monica S. Thakar, Carla A. Jaeger-Ruckstuhl, Jeffrey Stevens, Ashley Gray, Stanley R. Riddell, Marie Bleakley, Soheil Meshinchi, Scott N. Furlan

This paper introduces scrHLA-typing, a method to quantify HLA transcripts in single cells using long-read sequencing, showing its ability to detect allele-specific expression in post-transplant relapse samples.

bioRxiv · Sep 12, 2025 · PreprintMolecular Biology