Author

Nicholas W. Sugiarto

Broad InstituteORCID 0009-0001-7036-8375Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Genetics· 1 Genomics· 1 Molecular Biology· 1

Signature Assays, Organisms & Methods

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Research Focus:differential expression· 3 Organism:human· 3 Assay:bulk RNA-seq· 2 Research Focus:cell type annotation· 2 Research Focus:gene regulatory network inference· 2 Assay:scRNA-seq· 2 Approach:statistical model· 2 Research Focus:cell-cell communication· 1

Frequent Co-Authors

Soumya RaychaudhuriiD· 3 shared Alice HorisbergeriD· 2 shared Andrea FavaiD· 2 shared Anne DavidsoniD· 2 shared Arnon AraziiD· 2 shared Betty DiamondiD· 2 shared Carla Marie CudaiD· 2 shared Céline C. BerthieriD· 2 shared

Activity by Year

2025-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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3 shared papersGenetics

Soumya RaychaudhuriORCID

Mutual co-authors in cluster

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3 papers

Recent·Most cited

GeneticsbioRxivPreprintAug 4, 2026

Identifying the causal allele in the CD40 autoimmune locus enables discovery of context-specific trans-effects in B cells

Yoshihiko Tomofuji, Zepeng Mu, Hafsa M. Mire…·Soumya Raychaudhuri

The paper identifies a causal allele in the CD40 locus and demonstrates context-specific trans-effects in B cells using CITE-seq and CRAFT-seq.

DOI 10.64898/2026.07.29.741564

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GenomicsNature CommunicationsPeer-reviewedApr 25, 2026

Early and late RNA eQTL are driven by different genetic mechanisms

Saori Sakaue, Accelerating Medicines Partnership®: RA/SLE Network, Jennifer H. Anolik…·Soumya Raychaudhuri

The paper identifies distinct genetic mechanisms for early (nuclear) and late (cellular) RNA eQTL by comparing their genomic localization and functional effects across tissues.

2 citationstop 5%

humanbulk RNA-seq

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Molecular BiologybioRxivPreprintAug 11, 2025

A population-scale atlas of blood and tissue in lupus nephritis

Nicholas W. Sugiarto, Siddarth Gurajala, Michelle L. Curtis…·Soumya Raychaudhuri

A single-cell atlas of blood and tissue samples from lupus nephritis patients and healthy controls identifies stromal and immune populations, including scar-associated macrophages, which correlate with disease activity.

4 citations

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