Author

Yiru Chen

Second Affiliated Hospital of Zhejiang UniversityORCID 0009-0002-5114-4947Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Research Focus:database / resource· 2 Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1 Approach:deep learning· 1 Research Focus:differential expression· 1 Organism:human· 1 Approach:optimal transport· 1 Assay:scRNA-seq· 1

Frequent Co-Authors

Bing HeiD· 1 shared Bing Xin GaoiD· 1 shared Bingshan LiiD· 1 shared Hirak SarkariD· 1 shared Jianhua YaoiD· 1 shared Lie WangiD· 1 shared Linrong LuiD· 1 shared Lize WuiD· 1 shared

Activity by Year

2025-2025 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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1 shared paperBioinformatics

Bing HeORCID

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2 papers

Recent·Most cited

BioinformaticsbioRxivPreprintDec 8, 2025

From features to slice: parameter-cloud modeling of spatial transcriptomics for simulation and 3D interpolatory augmentation

Yiru Chen, Manfei Xie, Yunfei Hu…·Xin Zhou

FEAST generates synthetic spatial transcriptomics data with tunable spatial and transcriptional variation for benchmarking and 3D reconstruction.

2 citations

spatial transcriptomicsstatistical model

𝕏 PostBluesky

BioinformaticsCell DiscoveryPeer-reviewedOct 14, 2025

Disease associated human TCR characterization by deep-learning framework TCR-DeepInsight

Ziwei Xue, Lize Wu, Bing Xin Gao…·Wanlu Liu

The paper constructs a single-cell GEX-TCR reference atlas and introduces TCR-DeepInsight, a deep-learning framework to characterize disease-associated TCRs.

9 citations

𝕏 PostBluesky