Author

Valentin Schwarze

Max Planck Institute of Experimental MedicineORCID 0000-0001-9277-0122Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Neuroscience· 1

Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Research Focus:clustering· 1 Approach:deep learning· 1 Assay:electronic health records· 1 Approach:experimental assay· 1 Organism:mouse· 1

Frequent Co-Authors

Benjamin H. CooperiD· 2 shared Cordelia ImigiD· 2 shared Ahmed ShaabaniD· 1 shared Anika HintzeiD· 1 shared Anwai ArchitiD· 1 shared Arsen PetrovićiD· 1 shared Carolin WichmanniD· 1 shared Christiane Harenberg· 1 shared

Activity by Year

2021-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 30 mutual co-author links

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2 shared papersBioinformatics

Benjamin H. CooperORCID

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2 papers

Recent·Most cited

BioinformaticsMolecular Biology of the CellPeer-reviewedAug 28, 2025

SynapseNet: Deep Learning for Automatic Synapse Reconstruction

Sarah Muth, Frederieke Moschref, Luca Freckmann…·Constantin Pape

SynapseNet automatically segments synapses in electron micrographs using deep learning, enabling efficient analysis of synaptic structures.

16 citationstop 3%

electronic health recordsdeep learning

𝕏 PostBluesky

NeurosciencebioRxivPreprintMay 28, 2021

Dissecting Functional, Structural, and Molecular Requirements for Serotonin Release from Mouse Enterochromaffin Cells

Ahmed Shaaban, Frederike Maaß, Valentin Schwarze…·Cordelia Imig

The paper investigates serotonin release mechanisms from mouse enterochromaffin cells using multiple techniques and finds that serotonin is primarily released from large dense-core vesicles with slow kinetics, similar to other endocrine cells.

9 citations

mousebulk RNA-seq

𝕏 PostBluesky