Author

Rachael Swanstrom

Allen Institute for Brain ScienceORCID 0009-0002-9703-521XUnclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Neuroscience· 3

Signature Assays, Organisms & Methods

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Organism:mouse· 3 Research Focus:cell type annotation· 2 Approach:experimental assay· 2 Assay:spatial transcriptomics· 2 Research Focus:database / resource· 1 Assay:electronic health records· 1 Approach:statistical model· 1

Frequent Co-Authors

Bethanny P. DanskiniD· 3 shared Casey M Schneider-MizelliD· 3 shared Erika R. NeaceiD· 3 shared Forrest CollmaniD· 3 shared Nuno Maçarico da CostaiD· 3 shared Benjamin D. PedigoiD· 2 shared Chi ZhangiD· 2 shared Emily JoyceiD· 2 shared

Activity by Year

2025-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 44 mutual co-author links

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3 shared papersNeuroscience

Bethanny P. DanskinORCID

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3 papers

Recent·Most cited

NeurosciencebioRxivPreprintMay 10, 2026

Cell-type-specific parallel pathways in the canonical cortical microcircuit

Chi Zhang, Casey M Schneider-Mizell, Bethanny P. Danskin…·Nuno Maçarico da Costa

The paper maps connectivity in mouse primary visual cortex, revealing cell-type-specific parallel pathways for top-down and bottom-up processing.

2 citations

mousespatial transcriptomics

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NeurosciencebioRxivPreprintApr 3, 2026

A quantitative census of millions of postsynaptic structures in a large electron microscopy volume of mouse visual cortex

Benjamin D. Pedigo, Bethanny P. Danskin, Rachael Swanstrom…·Forrest Collman

The paper presents a computational pipeline for classifying postsynaptic targets in neuronal meshes, achieving high accuracy on mouse visual cortex data and demonstrating generalizability to other connectomes.

3 citations

mouseelectronic health records

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NeuroscienceNaturePeer-reviewedApr 9, 2025

Functional connectomics spanning multiple areas of mouse visual cortex

J. Alexander Bae, Mahaly Baptiste, Maya R. Baptiste…·Chi Zhang

The paper presents a functional connectomics dataset of mouse visual cortex, combining calcium imaging with EM reconstruction to study neural circuits and their connectivity.

197 citationstop 1%

mousespatial transcriptomics

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