Author
Howard Hughes Medical InstituteORCID 0000-0002-8075-6160Unclaimed ORCID profile · follow to get notified of new preprints
8 papers
Recent·Most cited
Chi Zhang, Casey M Schneider-Mizell, Bethanny P. Danskin, Rachael Swanstrom, Erika R. Neace, Emily Joyce, Benjamin D. Pedigo, Forrest Collman, Nuno Maçarico da Costa
The paper maps connectivity in mouse primary visual cortex, revealing cell-type-specific parallel pathways for top-down and bottom-up processing.
bioRxiv · May 10, 2026 · PreprintNeuroscience
Benjamin D. Pedigo, Bethanny P. Danskin, Rachael Swanstrom, Erika R. Neace, Sven Dorkenwald, Nuno Maçarico da Costa, Casey M Schneider-Mizell, Forrest Collman
The paper presents a computational pipeline for classifying postsynaptic targets in neuronal meshes, achieving high accuracy on mouse visual cortex data and demonstrating generalizability to other connectomes.
bioRxiv · Apr 3, 2026 · PreprintNeuroscience
J. Alexander Bae, Mahaly Baptiste, Maya R. Baptiste, Caitlyn A. Bishop, Ágnes L. Bodor, Derrick Brittain, Victoria Brooks, JoAnn Buchanan, Daniel J. Bumbarger, Manuel Castro, Brendan Celii, Erick Cobos, Forrest Collman, Nuno Maçarico da Costa, Bethanny P. Danskin, , Chi Zhang
The paper presents a functional connectomics dataset of mouse visual cortex, combining calcium imaging with EM reconstruction to study neural circuits and their connectivity.
Nature · Apr 9, 2025Peer-reviewedNeuroscience
Kit D. Longden, Patricia K. Rivlin, Michał Januszewski, Erika R. Neace, Louis K. Scheffer, Christopher Ordish, Jody Clements, Elliott Phillips, Natalie Laing Smith, Satoko Takemura, Lowell A. Umayam, Claire Walsh, Emily A Yakal, Timothy F. Musial, Michael J. Devine, , Stuart Berg
The paper analyzes mitochondria in the Drosophila connectome, showing variations in size, location, and appearance across cell types and brain regions.
bioRxiv · Apr 21, 2024 · PreprintNeuroscience
Shin-ya Takemura, Kenneth J. Hayworth, Gary B. Huang, Michał Januszewski, Zhiyuan Lu, Elizabeth C. Marin, Stephan Preibisch, C. Shan Xu, John Bogovic, Andrew S Champion, Han SJ Cheong, Marta Costa, Katharina Eichler, William T. Katz, Christopher J. Knecht, , Stuart Berg
Roughly 23 thousand traced neurons and 10 million TBars of the male Drosophila nerve cord, reconstructed from electron microscopy, typed, and queryable in neuPrint down to motor neurons.
bioRxiv · Jun 5, 2023 · PreprintNeuroscience✦ In-depth digest
Louis K. Scheffer, C. Shan Xu, Michał Januszewski, Zhiyuan Lu, Shin-ya Takemura, Kenneth J. Hayworth, Gary B. Huang, Kazunori Shinomiya, Jeremy Maitin-Shepard, Stuart Berg, Jody Clements, Philip M. Hubbard, William T. Katz, Lowell A. Umayam, Ting Zhao, , Gregory S.X.E. Jefferis
The paper presents a detailed connectome of the adult Drosophila central brain, including new methods for data analysis and biological insights into neural circuit organization.
eLife · Sep 3, 2020Peer-reviewedBioinformatics
C. Shan Xu, Michał Januszewski, Zhiyuan Lu, Shin-ya Takemura, Kenneth J. Hayworth, Gary B. Huang, Kazunori Shinomiya, Jeremy Maitin-Shepard, David Ackerman, Stuart Berg, Tim M. Blakely, John Bogovic, Jody Clements, Tom Dolafi, Philip M. Hubbard, , Ian A. Meinertzhagen
A dense electron-microscopy reconstruction of half the fly central brain, with nearly every cell typed and queryable online, turns months of tracing partners into a database lookup.
bioRxiv · Jan 21, 2020 · PreprintNeuroscience✦ In-depth digest
Philip M. Hubbard, Stuart Berg, Ting Zhao, Donald J. Olbris, Lowell A. Umayam, Jeremy Maitin-Shepard, Michał Januszewski, William T. Katz, Erika R. Neace, Stephen M. Plaza
This paper introduces semi-automated strategies combining 3D visualization and machine guidance to accelerate EM connectome reconstruction, showing improved performance over prior methods.
bioRxiv · Jan 17, 2020 · PreprintNeuroscience