Connor Finkbeiner

This study identifies molecular and architectural changes in normal-adjacent field tissue in HNSCC that disrupt epithelial differentiation and may promote cancer development.

Echo identifies desynchronized cell states and their drivers from paired single-cell RNA and ATAC data, revealing structured desynchronization in human fetal retina and hematopoiesis.

SCOPE identifies fate-decision states and regulatory drivers in single-cell differentiation by localizing branchpoints and epigenetic priming across developmental processes.

This paper introduces fibertools, a toolkit for DNA-m6A detection and integration of long-read genetic and epigenetic data, achieving high accuracy and speed.