Author

Shuhao Xu

University of California San DiegoORCID 0009-0003-8849-1237Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Neuroscience· 1

Signature Assays, Organisms & Methods

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Research Focus:differential expression· 2 Research Focus:cell type annotation· 1 Research Focus:cell-cell communication· 1 Assay:ChIP-seq· 1 Approach:experimental assay· 1 Organism:human· 1 Assay:metagenomics· 1 Approach:statistical model· 1

Frequent Co-Authors

Gene Wei-Ming YeoiD· 2 shared Benjamin Hoover· 1 shared Brian Yee· 1 shared Dong YangiD· 1 shared Hsuan-Lin HeriD· 1 shared Katherine Rothamel· 1 shared Keegan FlanaganiD· 1 shared Megan Huang· 1 shared

Activity by Year

2025-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 37 mutual co-author links

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2 shared papersBioinformatics

Gene Wei-Ming YeoORCID

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2 papers

Recent·Most cited

Flipper: An advanced framework for identifyingdifferential RNA binding behavior with eCLIP data

Keegan Flanagan, Shuhao Xu, Gene Wei-Ming Yeo

Flipper identifies differential RNA binding behavior using eCLIP data with improved normalization and separation of expression/splicing effects from true binding changes.

bioRxiv · Aug 11, 2026 · PreprintBioinformatics

KIF5A binds RNA to orchestrate synaptic mRNA localization and stress granules in ALS

Phuong Le, Neeraj K. Lal, Shuhao Xu, Sara Mumford, Megan Huang, Dong Yang, Orel Mizrahi, Benjamin Hoover, Brian Yee, Mei Yuan, Katherine Rothamel, Hsuan-Lin Her, Steven M. Blue, Neil A. Shneider, Gene Wei-Ming Yeo

This study shows KIF5A binds RNA to regulate synaptic mRNA localization and stress granules, with ALS mutations disrupting synaptic homeostasis.

bioRxiv · Oct 31, 2025 · PreprintNeuroscience