Author

Ido Yofe

Broad InstituteORCID 0009-0004-4747-7057Unclaimed ORCID profile · follow to get notified of new preprints

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Ido Yofe1 paper

Biology Disciplines

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Bioinformatics· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Organism:mouse· 2 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Assay:ChIP-seq· 1 Research Focus:deconvolution· 1 Research Focus:differential expression· 1 Approach:experimental assay· 1 Organism:human· 1

Frequent Co-Authors

Adam Jelinski· 1 shared Adrianne D. GladdeniD· 1 shared Allon WagneriD· 1 shared Alon GoreniD· 1 shared Baoguo LiiD· 1 shared Can ErgeniD· 1 shared Catherine LiiD· 1 shared Catherine XueiD· 1 shared

Activity by Year

2016-2022 · peak 1/yr

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10 top collaborators · 21 mutual co-author links

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1 shared paperBioinformatics

Adam Jelinski

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2 papers

Recent·Most cited

BioinformaticsNature BiotechnologyPeer-reviewedApr 21, 2022

Multi-resolution deconvolution of spatial transcriptomics data reveals continuous patterns of inflammation

Romain Lopez, Baoguo Li, Hadas Keren‐Shaul…·Nir Yosef

The paper introduces DestVI, a method for multi-resolution spatial transcriptomics analysis that captures continuous cell state variation, and applies it to study inflammation in lymph nodes and tumors.

275 citationstop 1%

mousespatial transcriptomics

𝕏 PostBluesky

GenomicsEpigenetics & ChromatinPeer-reviewedNov 4, 2016

Systematic comparison of monoclonal versus polyclonal antibodies for mapping histone modifications by ChIP-seq

Michele Busby, Catherine Xue, Catherine Li…·Alon Goren

This study compares monoclonal and polyclonal antibodies for ChIP-seq of histone modifications, finding monoclonals perform similarly in most cases but show differences for H3K27ac.

38 citations

𝕏 PostBluesky