Siqi Liu

The paper integrates genotype-to-phenotype maps into ecological models to develop an ecology of metagenomes, revealing gene-level dynamics and metagenomic hitchhiking.

The paper uses microcosm experiments and modeling to identify three functional regimes governing soil microbiome responses to pH changes, revealing distinct metabolic dynamics and underlying mechanisms.

The paper develops a mechanical atlas for ascidian gastrulation by integrating mathematical models with image data to map spatio-temporal mechanical stresses.