Author

Siqi Liu

Jianghan University

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Same name, identified by ORCID

Biology Disciplines

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Bioinformatics· 1 Cell Biology· 1 Developmental Biology· 1

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 2 Organism:mouse· 2 Assay:bulk RNA-seq· 1 Research Focus:database / resource· 1 Research Focus:differential expression· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1 Approach:genetic perturbation / CRISPR· 1

Frequent Co-Authors

Alexander J. TrostleiD· 1 shared Anne LeiD· 1 shared Charlotte Raymond· 1 shared Cheng Xu· 1 shared Guangmei TianiD· 1 shared Haibo WangiD· 1 shared Haochen JiangiD· 1 shared Hongni LiuiD· 1 shared

Activity by Year

2025-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 16 mutual co-author links

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1 shared paperDevelopmental Biology

Alexander J. TrostleORCID

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3 papers

Recent·Most cited

Macrophage metabolism directs regenerative versus fibrotic healing through BMP signaling in the mouse digit tip

Mimi C. Sammarco, Siqi Liu, Ni Su, Madhumidha Ramesh, Charlotte Raymond, John Carleton, Anne Le, Alexander J. Trostle, Robert Tower, Jennifer Simkin

This study identifies a regeneration-specific macrophage population in mouse digit tip regeneration that uses BMP signaling and a unique metabolic profile to drive bone formation, absent in scar-forming injuries.

bioRxiv · May 7, 2026 · PreprintDevelopmental Biology

An ancient transcription factor functions as the master regulator of primary cilia formation

Weihua Wang, Xiqi Zhang, Yi Qiu, Xiangrui Meng, Sitong Cheng, Yutong Chen, Siqi Liu, Wenhui Chen, Jiayan Yi, Xiwen You, Hongni Liu, Junqiao Xing, Cheng Xu, Haochen Jiang, Haibo Wang, , Zhangfeng Hu

This study identifies Xap5 as a master regulator of primary cilia formation by interacting with Nono to activate Sox5 and Sox9, revealing a conserved transcriptional network involved in ciliary diversity.

bioRxiv · Nov 28, 2025 · PreprintCell Biology

AACDB: Antigen-Antibody Complex Database -- a Comprehensive Database Unlocking Insights into Interaction Interface

Yuwei Zhou, Wenwen Liu, Ziru Huang, Yushu Gou, Siqi Liu, Lixu Jiang, Yue Yang, Jian Hua Huang

AACDB provides a comprehensive database of antigen-antibody complexes to aid in immunoinformatics research and antibody therapy development.

eLife · May 22, 2025Peer-reviewedBioinformatics