Author

Alexandra Kim

Arc Research InstituteORCID 0009-0005-5503-3584Unclaimed ORCID profile · follow to get notified of new preprints

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Alexandra Kim1 paper

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Bioinformatics· 1

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Organism:bacteria (other)· 1 Approach:benchmark study· 1 Research Focus:benchmarking· 1 Organism:E. coli· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1 Approach:machine learning (classical)· 1 Assay:metagenomics· 1

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Brian HieiD· 1 shared Claudia L. DriscolliD· 1 shared David LiiD· 1 shared Garyk BrixiiD· 1 shared Karl A. DeisserothiD· 1 shared Linyi GaoiD· 1 shared Mateus Bernabe FiamenghiiD· 1 shared Max E. WilkinsoniD· 1 shared

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2026-2026 · peak 1/yr

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Brian HieORCID

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1 paper

Recent·Most cited

BioinformaticsbioRxivPreprintSep 24, 2026

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Coevolutionary mining of prokaryotic non-coding elements with a genome language model

David Li, Garyk Brixi, Alexandra Kim…·Brian Hie

Minerva extracts RNA base-pairing, protein-contact and repeat maps from a genome language model without alignments, flagging unannotated structured loci and a phage ncRNA array reverse-transcribed into short cDNAs.

2 citations

bacteria (other)E. coli

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