Author

Marek Sztuka

Wrocław University of Environmental and Life SciencesORCID 0009-0005-6596-290XUnclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Bioinformatics· 1 Microbiology· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Approach:experimental assay· 2 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Research Focus:variant calling· 1 Assay:whole-genome sequencing· 1

Frequent Co-Authors

Joanna SzydaiD· 2 shared Magda MielczarekiD· 2 shared Piotr Hajduk· 2 shared David C. HuybeniD· 1 shared Dawid SłomianiD· 1 shared Falk HildebrandiD· 1 shared Jakub LiuiD· 1 shared Katarzyna SidorczukiD· 1 shared

Activity by Year

2024-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 35 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

2 shared papersMicrobiology

Joanna SzydaORCID

Mutual co-authors in cluster

Author profile →

2 papers

Recent·Most cited

MicrobiologybioRxivPreprintJul 7, 2025

Supplementation with effective microorganisms in earthen ponds affects common carp growth but not overall microbial communities

Michalina Jakimowicz, Katarzyna Sidorczuk, David C. Huyben…·Joanna Szyda

This study shows that adding effective microorganisms to feed and pond water improves common carp growth without changing microbial communities.

DOI 10.1101/2025.07.07.663436

bulk RNA-seqexperimental assay

𝕏 PostBluesky

BioinformaticsNAR Genomics and BioinformaticsPeer-reviewedApr 4, 2024

Nextflow vs. plain Bash: Different Approaches to the Parallelisation of SNP Calling from the Whole Genome Sequence Data

Marek Sztuka, Krzysztof Kotlarz, Magda Mielczarek…·Joanna Szyda

This paper compares SNP calling workflow parallelisation using plain Bash and Nextflow, finding that multi-process Nextflow is faster but uses more RAM and disk space.

2 citations

whole-genome sequencingexperimental assay

𝕏 PostBluesky