Falk Hildebrand

REMAG improves eukaryotic genome recovery from metagenomic data by using non-contrastive self-supervised learning, outperforming existing tools in producing near-complete genomes.

Protal provides ultra-fast, strain-resolved metagenomic profiling with high precision, outperforming existing tools in both species and strain-level analysis.

This study develops a method to enrich microeukaryotes in human stool samples for shotgun sequencing, improving their representation and taxonomic diversity in metagenomic libraries.

The paper tracks microbial community changes in grassland and forest sites following land abandonment, showing increased functional diversity and decreased taxonomic diversity with ecosystem development.

The paper evaluates DNA extraction and storage protocols for human faecal samples to optimize high-molecular weight DNA recovery for long-read metagenomics.

This study shows that adding effective microorganisms to feed and pond water improves common carp growth without changing microbial communities.

The paper identifies distinct rhizosphere microbiome profiles in ancestral bread wheat landraces compared to elite varieties, highlighting genetic links to microbial community composition.

This study examines the effects of a one-year gluten-free diet on gut function and microbiome in celiac disease patients compared to healthy volunteers.

LotuS2 is a fast and accurate tool for amplicon sequencing analysis that outperforms existing pipelines in speed and diversity metrics.

Metage2Metabo identifies keystone species in large microbiotas by analyzing metabolic networks and complementarity.

The paper analyzes pan-genomes of 155 prokaryotic species to assess how environmental and phylogenetic factors influence strain diversity and pan-genome features.