Frédéric Choulet

The paper compares early transcriptomic responses in wheat cultivars to Zymoseptoria tritici, finding that defense-related genes show higher expression in incompatible interactions.

Pan1C is a pipeline that builds chromosome-level pangenome graphs, improving alignment and variant calling by integrating multiple strategies and benchmarked across different species.

This study presents a high-quality genome assembly of Ae. umbellulata and resequencing data revealing structural variations, evolutionary sub-populations, and new resistance gene haplotypes useful for wheat improvement.

The paper analyzes TE variability across wheat genomes and finds no increase in transposition rates due to polyploidy.

The paper develops an updated capture panel for sequencing regulatory regions in wheat and related species, improving specificity and coverage over previous methods.

This paper presents a high-quality chromosome-scale genome assembly of bread wheat using long-read sequencing, enhancing research and breeding applications.

This study examines homoeologous copy number variations in hexaploid wheat, showing that triads represent core genes while dyads and tetrads are dispensable, with subgenome differences linked to post-polyploid diploidization.

A phylogeographical study reveals the complex history of wheat genetic diversity through time and space.

The paper introduces a portal linking the bread wheat reference genome to genetic and phenomic data for wheat improvement.

The paper analyzes the impact of transposable elements on genome structure and evolution in bread wheat, finding conserved TE distribution and chromatin structure across subgenomes.