Author

Shirley Zhu

Stanford MedicineORCID 0009-0005-8492-7915Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Organism:human· 2 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Research Focus:differential expression· 1 Assay:DNA methylation· 1 Approach:experimental assay· 1 Approach:statistical model· 1 Research Focus:variant calling· 1

Frequent Co-Authors

Joseph W. FoleyiD· 2 shared Robert B. WestiD· 2 shared Chunfang ZhuiD· 1 shared Michael Joseph MeaneyiD· 1 shared Peipei Lu· 1 shared Philippe JolivetiD· 1 shared

Activity by Year

2019-2023 · peak 1/yr

Co-Author Collaboration Network

6 top collaborators · 15 mutual co-author links

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2 shared papersGenomics

Joseph W. FoleyORCID

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2 papers

Recent·Most cited

GenomicsLife Science AlliancePeer-reviewedSep 29, 2023

Cost-effective DNA methylation profiling by FML-seq

Joseph W. Foley, Shirley Zhu, Robert B. West

FML-seq reduces costs of DNA methylation profiling while maintaining accuracy in measuring absolute and differential cytosine methylation in human cell lines.

6 citations

humanDNA methylation

𝕏 PostBluesky

GenomicsGenome ResearchPeer-reviewedNov 1, 2019

Gene-expression profiling of single cells from archival tissue with laser-capture microdissection and Smart-3SEQ

Joseph W. Foley, Chunfang Zhu, Philippe Jolivet…·Robert B. West

This paper introduces Smart-3SEQ, a method for accurate gene expression profiling from small RNA samples, including FFPE tissue, and demonstrates its application to identify new macrophage phenotypes in the tumor microenvironment.

156 citations

humanbulk RNA-seq

𝕏 PostBluesky