Author

Simonida Zehr

Goethe University FrankfurtORCID 0009-0005-8510-657XUnclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:differential expression· 2 Approach:statistical model· 2 Assay:bulk RNA-seq· 1 Research Focus:cell-cell communication· 1 Assay:ChIP-seq· 1 Research Focus:gene regulatory network inference· 1 Research Focus:trajectory inference· 1

Frequent Co-Authors

Marcel H. SchulziD· 2 shared Matthias S. LeisegangiD· 2 shared Ralf Peter BrandesiD· 2 shared Timothy WarwickiD· 2 shared Alessandro BonettiiD· 1 shared Emma Catharina WalshiD· 1 shared Sandra SeredinskiiD· 1 shared Sebastian WolfiD· 1 shared

Activity by Year

2024-2025 · peak 1/yr

Co-Author Collaboration Network

9 top collaborators · 30 mutual co-author links

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2 shared papersBioinformatics

Marcel H. SchulzORCID

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2 papers

Recent·Most cited

BioinformaticsPLoS Computational BiologyPeer-reviewedMar 31, 2025

GeneCOCOA: Detecting context-specific functions of individual genes using co-expression data

Simonida Zehr, Sebastian Wolf, Thomas Oellerich…·Timothy Warwick

GeneCOCOA identifies context-specific functions of individual genes using co-expression data and curated functional gene sets, outperforming existing methods in gene-disease association recall.

4 citations

bulk RNA-seqstatistical model

𝕏 PostBluesky

BioinformaticsbioRxivPreprintSep 17, 2024

Detection of statistically robust interactions from diverse RNA-DNA ligation data

Simonida Zehr, Sandra Seredinski, Emma Catharina Walsh…·Timothy Warwick

The paper introduces RADIAnT, a computational pipeline for detecting RNA-DNA interactions from ligation data, showing improved accuracy in identifying Malat1-DNA interactions and dynamic chromatin-associated RNAs.

DOI 10.1101/2024.09.17.610461

ChIP-seqstatistical model

𝕏 PostBluesky