Author

Martin Fenk

Humboldt-Universität zu BerlinORCID 0009-0006-3406-1698Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Microbiology· 1

Signature Assays, Organisms & Methods

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Organism:bacteria (other)· 1 Assay:bulk RNA-seq· 1 Approach:deep learning· 1 Approach:experimental assay· 1 Research Focus:host-pathogen & immune response· 1 Organism:human· 1 Research Focus:variant calling· 1 Assay:whole-genome sequencing· 1

Frequent Co-Authors

Felix M. KeyiD· 2 shared Alexandra HrdinaiD· 1 shared Alyssa H. MitchelliD· 1 shared Arolyn ConwilliD· 1 shared Bastian PasiekaiD· 1 shared Carey D. NadelliD· 1 shared Cătălina Suzana StînguiD· 1 shared Elina CoqueryiD· 1 shared

Activity by Year

2025-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 27 mutual co-author links

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2 shared papersBioinformatics

Felix M. KeyORCID

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2 papers

Recent·Most cited

BioinformaticsGenome ResearchPeer-reviewedSep 1, 2026

High-accuracy SNV calling for bacterial isolates using deep learning with AccuSNV

Herui Liao, Arolyn Conwill, Ian C. Light-Maka…·Tami D. Lieberman

AccuSNV is a deep learning tool for high-accuracy bacterial SNV calling that outperforms existing methods in simulated and real datasets.

DOI 10.1101/gr.281341.125

bacteria (other)whole-genome sequencing

𝕏 PostBluesky

MicrobiologybioRxivPreprintOct 23, 2025

Colonization, translocation, and evolution of opportunistic pathogens during healthcare-associated infections

Martin Fenk, Alexandra Hrdina, James B. Winans…·Felix M. Key

The paper tracks the colonization and evolution of opportunistic pathogens in critically ill patients, identifying a mutation linked to healthcare-associated infections.

DOI 10.1101/2025.10.23.683921

humanbulk RNA-seq

𝕏 PostBluesky