Author

Mara Neacsu

ETH ZurichORCID 0009-0006-3714-5491Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Organism:human· 2 Approach:statistical model· 2 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Research Focus:differential expression· 1 Research Focus:genome assembly· 1 Research Focus:phylogenetics / evolution· 1 Assay:scRNA-seq· 1

Frequent Co-Authors

Alexandre LanauiD· 1 shared Anastasia EscheriD· 1 shared Charlyne BürkiiD· 1 shared Christiane BeckmanniD· 1 shared Christoph NoppeniD· 1 shared David B. MeyeriD· 1 shared Erkan NarmanliiD· 1 shared Franziska SingeriD· 1 shared

Activity by Year

2026-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 24 mutual co-author links

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1 shared paperBioinformatics

Alexandre LanauORCID

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2 papers

Recent·Most cited

BioinformaticsbioRxivPreprintSep 3, 2026

An alignment-last approach enables rapid transcriptomic biomarker discovery in large cohorts

Erkan Narmanli, Alexandre Lanau, Mara Neacsu…·Joshua J. Waterfall

This paper introduces an alignment-last approach to transcriptomic analysis, enabling rapid biomarker discovery by using reads directly and revealing new transposable-element signatures and prognostic reads in cancer.

1 citation

humanbulk RNA-seq

𝕏 PostBluesky

GeneticsEpidemicsPeer-reviewedMar 18, 2026

Characterizing Co-Circulating Respiratory Virus Genomic Diversity in Switzerland with Hybrid-Capture Sequencing and Phylogenetic Reconstructions: Insights into the 2023/24 Season

Charlyne Bürki, Matteo Carrara, Lea Fahrni…·Tanja Stadler

The paper characterizes respiratory virus genomic diversity in Switzerland using hybrid-capture sequencing and phylogenetic analysis, identifying prevalent strains and evolutionary insights.

1 citation

humanwhole-genome sequencing

𝕏 PostBluesky