Matteo Carrara

Characterizing Co-Circulating Respiratory Virus Genomic Diversity in Switzerland with Hybrid-Capture Sequencing and Phylogenetic Reconstructions: Insights into the 2023/24 Season

The paper characterizes respiratory virus genomic diversity in Switzerland using hybrid-capture sequencing and phylogenetic analysis, identifying prevalent strains and evolutionary insights.

V-pipe 3.0: a sustainable pipeline for within-sample viral genetic diversity estimation

V-pipe 3.0 is a computational pipeline for analyzing viral genomic data, enabling reproducible and scalable estimation of within-sample genetic diversity.

gExcite - A start-to-end framework for single-cell gene expression, hashing, and antibody analysis

gExcite is a start-to-end framework for analyzing single-cell gene expression and CITE-seq data, including hashing deconvolution, and is scalable for multiple samples.

Dysregulation of circular RNAs in myotonic dystrophy type 1

This study identifies dysregulated circular RNAs in myotonic dystrophy type 1 patients using RNA-sequencing and qPCR, showing tissue-specific expression patterns and potential as biomarkers.