Author

Aisha Shah

SIB Swiss Institute of BioinformaticsORCID 0009-0006-7530-3438Unclaimed ORCID profile · follow to get notified of new preprints

Additional preprints under this name without ORCID

Aisha Shah1 paper · Barcelona Supercomputing Center

Biology Disciplines

Click to filter author papers

Bioinformatics· 1 Immunology· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Research Focus:cell type annotation· 1 Assay:CITE-seq· 1 Research Focus:clustering· 1 Research Focus:database / resource· 1 Research Focus:drug response / drug discovery· 1 Organism:human· 1 Approach:machine learning (classical)· 1 Assay:multiome· 1

Frequent Co-Authors

David GfelleriD· 2 shared Alexandre HarariiD· 1 shared Aurélie AG GabrieliD· 1 shared Aymeric AugeriD· 1 shared Bastien DolfiiD· 1 shared Benoît Duc· 1 shared Dana Léa MorenoiD· 1 shared Giancarlo CroceiD· 1 shared

Activity by Year

2026-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 25 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

2 shared papersImmunology

David GfellerORCID

Mutual co-authors in cluster

Author profile →

2 papers

Recent·Most cited

ImmunologybioRxivPreprintMar 18, 2026

Unpaired TCRα + TCRβ sequencing is sufficient for training machine learning TCR-epitope recognition predictors

Aisha Shah, Raphaël Genolet, Aymeric Auger…·David Gfeller

This study shows that unpaired TCRα + TCRβ sequencing can train accurate TCR-epitope recognition predictors at lower cost than paired sequencing.

2 citations

CITE-seqmachine learning (classical)

𝕏 PostBluesky

BioinformaticsbioRxivPreprintFeb 20, 2026

SuperCell2.0 enables semi-supervised construction of multimodal metacell atlases

Léonard Hérault, Aurélie AG Gabriel, Benoît Duc…·David Gfeller

SuperCell2.0 constructs multimodal metacell atlases from blood and tumor samples, identifying interferon-primed monocytes and macrophages with improved inter-modality consistency.

DOI 10.64898/2026.02.19.706848

𝕏 PostBluesky