Author

Varshini Vijay

University of California, Irvine

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:cell-cell communication· 1 Research Focus:clustering· 1 Research Focus:database / resource· 1 Approach:deep learning· 1 Research Focus:dimensionality reduction· 1 Approach:experimental assay· 1

Frequent Co-Authors

Bogdan BintuiD· 1 shared Christopher Zou· 1 shared Cinlong Huang· 1 shared Colin KerniD· 1 shared Daiji OkamuraiD· 1 shared David D. EllisoniD· 1 shared Dylan RiffleiD· 1 shared Erwin Poussi· 1 shared

Activity by Year

2026-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 36 mutual co-author links

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1 shared paperBioinformatics

Bogdan BintuORCID

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2 papers

Recent·Most cited

CARIBOU: Computational AI Research Interface for Bioinformatics, Omics, and Unifying Agents

Dylan Riffle, Nima Shirooni, Pavan Sureshkumar, Varshini Vijay, Matthew F. Rose

CARIBOU is a multi-agent AI system that autonomously performs bioinformatics analyses using HPC environments, adapting and refining workflows across datasets.

bioRxiv · May 28, 2026 · PreprintBioinformatics

PantheonOS: An Evolvable Multi-Agent Framework for Automatic Genomics Discovery

Weize Xu, Erwin Poussi, Quan Zhong, Zehua Zeng, Christopher Zou, Xuehai Wang, Yifan Lu, Miao Cui, Daiji Okamura, Cinlong Huang, Jiayuan Ding, Zhe Zhao, Yuheng Yang, Xinhai Pan, Varshini Vijay, , Xiaojie Qiu

PantheonOS introduces a multi-agent framework for automated genomics analysis, achieving super-human performance in batch correction and gene panel selection across diverse biological tasks.

bioRxiv · Feb 27, 2026 · PreprintBioinformatics