Author

Amanda Pupo

Memorial Sloan Kettering Cancer CenterORCID 0009-0008-1798-8170Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Cancer Biology· 2

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 2 Organism:human· 2 Approach:deep learning· 1 Research Focus:differential expression· 1 Assay:scRNA-seq· 1 Assay:snRNA-seq· 1 Approach:statistical model· 1

Frequent Co-Authors

Àlvaro Quintanal-VillalongaiD· 1 shared Amélie RoehrigiD· 1 shared Andrew McPhersoniD· 1 shared Anne Vincent‐SalomoniD· 1 shared Baptiste SimoniD· 1 shared Céline VallotiD· 1 shared Charles M. RudiniD· 1 shared Christina J. FalconiD· 1 shared

Activity by Year

2025-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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1 shared paperCancer Biology

Àlvaro Quintanal-VillalongaORCID

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2 papers

Recent·Most cited

Cancer BiologybioRxivPreprintJul 28, 2026

Routine FFPE sections support clinically compatible single-nucleus transcriptomics across six human cancer types

Jasper Wouters, Juliette Bertorello, Marine Gaillard…·Céline Vallot

This paper develops a workflow for single-nucleus transcriptomics from FFPE tumor samples, showing reproducible cellular composition analysis across six cancer types.

DOI 10.64898/2026.07.23.740343

humanscRNA-seq

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Cancer BiologybioRxivPreprintMay 7, 2025

Complementary modes of resistance to EGFR TKI in lung adenocarcinoma through MAPK activation and cellular plasticity

Matthew Zatzman, Àlvaro Quintanal-Villalonga, Sohrab Salehi…·Helena Alexandra Yu

This study identifies MAPK activation and cellular plasticity as complementary resistance mechanisms to EGFR TKI in lung adenocarcinoma using single-nuclei RNA sequencing and clinical data.

2 citations

humansnRNA-seq

𝕏 PostBluesky